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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaagaacttagcacactactaaattgttccaaatatatgaaataatgtcttctcctgctgaatttgttctagtttcttcatagctctgcttctttgttctgttttgagaatcttcacataatctcttaaactgactacttccatgaatctaaacatgtatgcttttctgagcagGCTGTTCATGATGGAGTAGATATTTTGAGTCTCTCGGTTGGTCCAAACAGTCCTCCAGCTACTACAAAGACAACATTCTTGAATCCATTTGATGCTACAC

Basic information

species Arabidopsis thaliana
transcript AT4G30020.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30020.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA13G00580.1 (Glycine max), 3'ss of exon 5
gtaagcaagaacttagcacactactaaattgttccaaatatatgaaataatgtcttctcctgctgaatttgttctagtttcttcatagctctgcttctttgttctgttttgagaatcttcacataatctcttaaactgactacttccatgaatctaaacatgtatgcttttctgagcagGCTGTTCATGATGGAGTAGATATTTTGAGTCTCTCGGTTGGTCCAAACAGTCCTCCAGCTACTACAAAGACAACATTCTTGAATCCATTTGATGCTACAC
                                                                  ||||    ||   |  |||      ||   |    |    ||||   | |  |   ||  | ||| ||| |  ||| ||     ||| |     | ||            ||||||||  |||||||||| |||||  | || || || ||||| || ||||||||||||||  |||| ||||| || || ||||| || |||||||||||||
-----------------------------------------------------------------catttaacataaaat--tcaacaaattgtcacacaatctcatttttttacttctggtattctatctaaaattttctaatttacaaaatttgggtgtcta------------cagGCTGTGTATGATGGAGTGGATATACTCAGCCTTTCAGTTGGACCCAACAGTCCTCCAGCAGCTACCAAGACTACGTTTTTGAACCCTTTTGATGCTACAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctcttaaactgactacttccatgaatctaaacatgtatgcttttctgagcagGCTGTTCATGATGGAGTAGATATTTTGAGTCTCTCGGTTGGTCCAAACAGTCCTCCAGCTACTACAAAGACAACATTCTTGAATCCATTTGATGCTACAC
                                        tgcttttct  CT-rich tract
                          aatctaaa  TA-rich tract