1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtagcaaattttcgtatatatactgatatacacaaacaaatcatcatgctatcgttttatacccttaacttcttctttttcgataacctacacgaaactttttatacttatatattatctcttaagtcttaactatggtttatatgaatagTTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG
species | Arabidopsis thaliana |
transcript | AT4G29100.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACAT TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGEST: gi|86059910|gb|DR355667.1|DR355667
genomic: ATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACATgtaagtagca ... atatgaatagTTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG
EST: ATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACAT TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGEST: gi|47832050|gb|CK121734.1|CK121734
genomic: ATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACATgtaagtagca ... atatgaatagTTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG
EST: ATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACAT TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG
genomic: ATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACATgtaagtagca ... atatgaatagTTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG
actttttatacttatatattatctcttaagtcttaactatggtttatatgaatagTTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG
tcttaac putative branch site (score: 2)
ttatacttatatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagcaaattttcgtatatatactgatatacacaaacaaatcatcatgctatcgttttatacccttaacttcttctttttcgataacctacacgaaactttttatacttatatattatctcttaagtcttaactatggtttatatgaatagTTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT