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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacaacagaaaagaatatctctttttactgttttctaatttcgtatcactcggttacatgtttacattcgatgtttggctacgcagGTCGCCTCAAAGGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAA

Basic information

species Arabidopsis thaliana
transcript AT4G28830.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874619|gb|AU235450.1|AU235450
EST:     GTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAG                         GTCGCCTCAAAGGCAGNTTATTCCTTGC
genomic: GTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaaca ... ggctacgcagGTCGCCTCAAAGGCAGTTTATTCCTTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctaatttcgtatcactcggttacatgtttacattcgatgtttggctacgcagGTCGCCTCAAAGGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAA
 ttctaat  putative branch site (score: 2)
                             tttacatt  TA-rich tract