1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatatctttgtctctcttctaatatcgaaaatgcaatcaactcaatatcgaaaatcatttgaatgtgttctttctttcatccgaggaaccacatatatgtggaagatgatctttgactatgtttctgcagATTGAGATGGGAAGCACCAATGTGAGGGTTGGTTCCACCATTTTCGGACCAAGAGAGTACCCCAAGAAAACAACTTAGCTACTATGCTCAAACACTTGTT
species | Arabidopsis thaliana |
transcript | AT4G26860.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGATCAATTTGAACTGTCCATGGGCATGTCTGGTGACTTCGAGCTAGCG ATTGAGATGGGAAGCACCEST: gi|86076079|gb|DR371836.1|DR371836
genomic: AGGATCAATTTGAACTGTCCATGGGCATGTCTGGTGACTTCGAGCTAGCGgtaatatctt ... gtttctgcagATTGAGATGGGAAGCACC
EST: AGGATCAATTTGAACTGTCCATGGGCATGTCTGGTGACTTCGAGCTAGCG ATTGAGATGGGAAGCACCAATGTGAGGGTTGGTTCCACCATTTTCGGACCAEST: gi|116472743|gb|EG515335.1|EG515335
genomic: AGGATCAATTTGAACTGTCCATGGGCATGTCTGGTGACTTCGAGCTAGCGgtaatatctt ... gtttctgcagATTGAGATGGGAAGCACCAATGTGAGGGTTGGTTCCACCATTTTCGGACCA
EST: AGGATCAATTTGAACTGTCCATGGGCATGTCTGGTGACTTCGAGCTAGCG ATTGAGATGGGAAGCACCAATGTGAGGGTTGGTTCCACCATTTTCGGACCAEST: gi|86082547|gb|DR378306.1|DR378306
genomic: AGGATCAATTTGAACTGTCCATGGGCATGTCTGGTGACTTCGAGCTAGCGgtaatatctt ... gtttctgcagATTGAGATGGGAAGCACCAATGTGAGGGTTGGTTCCACCATTTTCGGACCA
EST: AGGATCAATTTGAACTGTCCATGGGCATGTCTGGTGACTTCGAGCTAGCG ATTGAGATGGGAAGCACCAATGTGAGGGTTGGTTCCACCATTTTCGGACCA
genomic: AGGATCAATTTGAACTGTCCATGGGCATGTCTGGTGACTTCGAGCTAGCGgtaatatctt ... gtttctgcagATTGAGATGGGAAGCACCAATGTGAGGGTTGGTTCCACCATTTTCGGACCA
ttcatccgaggaaccacatatatgtggaagatgatctttgactatgtttctgcagATTGAGATGGGAAGCACCAATGTGAGGGTTGGTTCCACCATTTTCGGACCAAGAGAGTACCCCAAGAAAACAACTTAGCTACTATGCTCAAACACTTGTT
ctttgac putative branch site (score: 4)
tgtttct putative PPT
acatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatctttgtctctcttctaatatcgaaaatgcaatcaactcaatatcgaaaatcatttgaatgtgttctttctttcatccgaggaaccacatatatgtggaagatgatctttgactatgtttctgcagATTGAGATGGGAAGCACCAATGTGAGGGTTGGTTCCACCATTTTCGGACCAAGAGAGTACCCCAAGAAAACAACTTAGCTACTATGCTCAAACACTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA