1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatataactacaccgttggatgaatacatgttttgaattacttaatcaaaagtgaataacagtttgaatgtaaaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAACACAAGTGAACCCAGCCGTGTGGGAGATAAGTGGTCACATGGTACTGA
species | Arabidopsis thaliana |
transcript | AT4G26850.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAATGCCACAG TGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAEST: gi|86058721|gb|DR354478.1|DR354478
genomic: TAATGCCACAGgtatataact ... aaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAA
EST: TCAACATTCTCATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAG TGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAEST: gi|125104772|gb|EL158751.1|EL158751
genomic: TCAACATTCTCATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAGgtatataact ... aaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAA
EST: AACATTCTCATCTCTGATTTGTTGGAAGGCAGATCTTCTTAATGCCACAG TGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGEST: gi|124976791|gb|EL050181.1|EL050181
genomic: AACATTCTCATCTCTGA-TTG-TGGAAGGCAGATCTTCTTAATGCCACAGgtatataact ... aaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGG
EST: TTCTCATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAG TGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAEST: gi|124831567|gb|EH916006.1|EH916006
genomic: TTCTCATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAGgtatataact ... aaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAA
EST: CATTCTCATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAG TGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCC-GGAGGTATEST: gi|125296919|gb|EL311004.1|EL311004
genomic: CATTCTCATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAGgtatataact ... aaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTAT
EST: ATCTTCTTAATGCCACAG TGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAEST: gi|124996502|gb|EL068771.1|EL068771
genomic: ATCTTCTTAATGCCACAGgtatataact ... aaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAA
EST: GGAAGGCAGATCTTCTTAATGCCACAG TGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAEST: gi|164122852|gb|ES157825.1|ES157825
genomic: GGAAGGCAGATCTTCTTAATGCCACAGgtatataact ... aaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAA
EST: TTGTGGAAGGCAGATCTTCTTAACTGCCACAG TGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAEST: gi|86058720|gb|DR354477.1|DR354477
genomic: TTGTGGAAGGCAGATCTTCTTAA-TGCCACAGgtatataact ... aaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGA
EST: TCAACATTCTCATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAG TGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAEST: gi|124753720|gb|EH843850.1|EH843850
genomic: TCAACATTCTCATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAGgtatataact ... aaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAA
EST: TTCTCATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAG TGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGA
genomic: TTCTCATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAGgtatataact ... aaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGA
atgttttgaattacttaatcaaaagtgaataacagtttgaatgtaaaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAACACAAGTGAACCCAGCCGTGTGGGAGATAAGTGGTCACATGGTACTGA
gaataac putative branch site (score: 2)
aattacttaatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatataactacaccgttggatgaatacatgttttgaattacttaatcaaaagtgaataacagtttgaatgtaaaaattgcagTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAACACAAGTGAACCCAGCCGTGTGGGAGATAAGTGGTCACATGGTACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT