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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttgcttatactgattaagtttttgtgcccttgagccacttacttaattatttacatagggagtagtatatttagcattttattgtgtctcttctctgcagTTACTGATAAGCATATAGTCAGATATAATGGCCGTGAGGTACGTTACCTTAATGAGCTCGAGTACATAAACAACGAAGTTTGGGCAAATGTGTGGCAG

Basic information

species Arabidopsis thaliana
transcript AT4G25720.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083978|gb|DR379737.1|DR379737
EST:     AAGTGATGGCACTTCTACATTATATCGGATGGACCCTCAAACAATGAAAG                         TTACTGATAAGCATATAGTCAGATATAATGGCCGTGAGGTACGTTACCTTA
genomic: AAGTGATGGCACTTCTACATTATATCGGATGGACCCTCAAACAATGAAAGgtttcttgct ... ttctctgcagTTACTGATAAGCATATAGTCAGATATAATGGCCGTGAGGTACGTTACCTTA
EST: gi|125274816|gb|EL288901.1|EL288901
EST:     AAGTGATGGCACTTCTACATTATATCGGATGGACCCTCAAACAATGAAAG                         TTACTGATAAGCATATAGTCAGATATAATGGCCGTGAGGTACG
genomic: AAGTGATGGCACTTCTACATTATATCGGATGGACCCTCAAACAATGAAAGgtttcttgct ... ttctctgcagTTACTGATAAGCATATAGTCAGATATAATGGCCGTGAGGTACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatttacatagggagtagtatatttagcattttattgtgtctcttctctgcagTTACTGATAAGCATATAGTCAGATATAATGGCCGTGAGGTACGTTACCTTAATGAGCTCGAGTACATAAACAACGAAGTTTGGGCAAATGTGTGGCAG
 acttaat  putative branch site (score: 4)
                                    ttgtgtctcttctct  putative PPT
                 tagtatatttagcatt  TA-rich tract