1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagaaccagatatacaacaccatgtttgttatatacactttttcattccttgaattgaatcgatctcaactgtgatgaacagGTGGAGGAGACGATGGAACGTATGAAGAAATGGGGAGGGAGTGAGACGACATCCAAGGATATACTTGC
species | Arabidopsis thaliana |
transcript | AT4G25640.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAACGTTGTTACTGTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAG GTGGAGGAGACGATGGAACGTATGAAGAAATGGGGAGGGAEST: gi|124730398|gb|EH821800.1|EH821800
genomic: AAACGTTGTTACTGTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAGgtaagaacca ... tgatgaacagGTGGAGGAGACGATGGAACGTATGAAGAAATGGGGAGGGA
EST: GTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAG GTGGAGGAGACGATGGAACGTATGAAGEST: gi|164139825|gb|ES112380.1|ES112380
genomic: GTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAGgtaagaacca ... tgatgaacagGTGGAGGAGACGATGGAACGTATGAAG
EST: AAACGTTGTTACTGTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAG GTGGAAGAGACGATGGAACGTAEST: gi|163971261|gb|ES019787.1|ES019787
genomic: AAACGTTGTTACTGTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAGgtaagaacca ... tgatgaacagGTGGAGGAGACGATGGAACGTA
EST: AAACGTTGTTACTGTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAG GTGGAAGAGACGATGGAACGTAEST: gi|125055650|gb|EL125753.1|EL125753
genomic: AAACGTTGTTACTGTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAGgtaagaacca ... tgatgaacagGTGGAGGAGACGATGGAACGTA
EST: AAACGTTGTTACTGTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAG GTGGAGGAGACGATGGAACGTATGAAGAAATGGG-AGGGA
genomic: AAACGTTGTTACTGTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAGgtaagaacca ... tgatgaacagGTGGAGGAGACGATGGAACGTATGAAGAAATGGGGAGGGA
gttatatacactttttcattccttgaattgaatcgatctcaactgtgatgaacagGTGGAGGAGACGATGGAACGTATGAAGAAATGGGGAGGGAGTGAGACGACATCCAAGGATATACTTGC
tttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaccagatatacaacaccatgtttgttatatacactttttcattccttgaattgaatcgatctcaactgtgatgaacagGTGGAGGAGACGATGGAACGTATGAAGAAATGGGGAGGGAGTGAGACGACATCCAAGGATATACTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA