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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtaagaatatatattttgtgtgaaatatatatttatcactttcatgcattgattaccgttgctaaattttacatttttgtaacctcttcttaccacttgcttttgaattttgattatcagTTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA

Basic information

species Arabidopsis thaliana
transcript AT4G23850.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125252928|gb|EL267013.1|EL267013
EST:     TGGAAGAGAAGAAGATCTCTGAG                         TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
genomic: TGGAAGAGAAGAAGATCTCTGAGgtacagtaag ... tgattatcagTTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
EST: gi|125018978|gb|EL091247.1|EL091247
EST:     AGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAG                         TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
genomic: AGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAGgtacagtaag ... tgattatcagTTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
EST: gi|125281992|gb|EL296077.1|EL296077
EST:     AGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAG                         TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
genomic: AGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAGgtacagtaag ... tgattatcagTTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
EST: gi|125304597|gb|EL318682.1|EL318682
EST:     AGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAG                         TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
genomic: AGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAGgtacagtaag ... tgattatcagTTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
EST: gi|125210271|gb|EL225225.1|EL225225
EST:     AGAAGAAGATCTCTGAG                         TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
genomic: AGAAGAAGATCTCTGAGgtacagtaag ... tgattatcagTTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttacatttttgtaacctcttcttaccacttgcttttgaattttgattatcagTTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
                                   ttttgaattttgatta  TA-rich tract