1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagagatcatgacctcattttgtcttaaaaacagtatatgaatcaacttttgtaaatgctaatcttttctttatgaatagGGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCATTGAAGAGGTTTATAATAACCTCGTTGAGATAACTAAATGTATCAAAGGTG
species | Arabidopsis thaliana |
transcript | AT4G22590.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAATGGATCCCCTGAAGACCCTAATTGTATAAAAACCACTGACCAACAG GGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCATTEST: gi|116472681|gb|EG515273.1|EG515273
genomic: CAAATGGATCCCCTGAAGACCCTAATTGTATAAAAACCACTGACCAACAGgtgagagatc ... ttatgaatagGGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCATT
EST: CAAATGGATCCCCTGAAGACCCTAATTGTATAAAAACCACTGACCAACAG GGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCATTEST: gi|116472680|gb|EG515272.1|EG515272
genomic: CAAATGGATCCCCTGAAGACCCTAATTGTATAAAAACCACTGACCAACAGgtgagagatc ... ttatgaatagGGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCATT
EST: CAAATGGATCCCCTGAAGACCCTAATTGTATAAAAACCACTGACCAACAG GGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCATTEST: gi|116472690|gb|EG515282.1|EG515282
genomic: CAAATGGATCCCCTGAAGACCCTAATTGTATAAAAACCACTGACCAACAGgtgagagatc ... ttatgaatagGGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCATT
EST: CAAATGGATCCCCTGAAGACCCTAATTGTATAAAAACCACTGACCAACAG GGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCATT
genomic: CAAATGGATCCCCTGAAGACCCTAATTGTATAAAAACCACTGACCAACAGgtgagagatc ... ttatgaatagGGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCATT
taaaaacagtatatgaatcaacttttgtaaatgctaatcttttctttatgaatagGGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCATTGAAGAGGTTTATAATAACCTCGTTGAGATAACTAAATGTATCAAAGGTG
tgctaat putative branch site (score: 2)
ctaatcttttcttt CT-rich tract
taatcttttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagagatcatgacctcattttgtcttaaaaacagtatatgaatcaacttttgtaaatgctaatcttttctttatgaatagGGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCATTGAAGAGGTTTATAATAACCTCGTTGAGATAACTAAATGTATCAAAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG