1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaactcaaaagttgacagctttctacactaagcaaagctaatattctttctttgaactaaatttttctgtgtaacataattctagATAATGGCGATTAAGAAGATTGATAATGCAGCACTTTCATTACAAGAAGAAGATAATTTCTTAGAAGCCGTTTCAAATATGTCGCGGTTGAGGCATCCAA
species | Arabidopsis thaliana |
transcript | AT4G22130.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGTTCTCTAGGCCGTGTCTATAGAGCAGAGTTCCCCAAATGGAAAG ATAATGGCGATTAAGAAGATTGATAATGCEST: gi|164232018|gb|ES129168.1|ES129168
genomic: TGAAGGTTCTCTAGGCCGTGTCTATAGAGCAGAGTTCCCCAA-TGGAAAGgtaactcaaa ... ataattctagATAATGGCGATTAAGAAGATTGATAATGC
EST: GTGAAGGTTCTCTAGGCCGTGTCTATAGAGCAGAGTTCCCCAATGGAAAG ATAATGGCGATTAAGAAGATTGATAATGCEST: gi|125217677|gb|EL231760.1|EL231760
genomic: GTGAAGGTTCTCTAGGCCGTGTCTATAGAGCAGAGTTCCCCAATGGAAAGgtaactcaaa ... ataattctagATAATGGCGATTAAGAAGATTGATAATGC
EST: GTCTATAGAGCAGAGTTCCCCAATGGAAAG ATAATGGCGATTAAGAAGATTGATAATGCAGCACTTT
genomic: GTCTATAGAGCAGAGTTCCCCAATGGAAAGgtaactcaaa ... ataattctagATAATGGCGATTAAGAAGATTGATAATGCAGCACTTT
agcaaagctaatattctttctttgaactaaatttttctgtgtaacataattctagATAATGGCGATTAAGAAGATTGATAATGCAGCACTTTCATTACAAGAAGAAGATAATTTCTTAGAAGCCGTTTCAAATATGTCGCGGTTGAGGCATCCAA
taatattctttctttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactcaaaagttgacagctttctacactaagcaaagctaatattctttctttgaactaaatttttctgtgtaacataattctagATAATGGCGATTAAGAAGATTGATAATGCAGCACTTTCATTACAAGAAGAAGATAATTTCTTAGAAGCCGTTTCAAATATGTCGCGGTTGAGGCATCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC