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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcgcttacctatcactttagcatagtcatatcacttccagtttccattgatctattgtttctttattcagGGACCTTTCTCATAACAACTTCAGTGGCGATCTTCCTAGTTCCTTAAGCACAGTGTCCACACTTTCCGTTCT

Basic information

species Arabidopsis thaliana
transcript AT4G22130.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86066710|gb|DR362467.1|DR362467
EST:     ACAATGTCAATAGGAGATATCTTTGCTGATCATAAGTCACTGGCAACCTT                         GGACCTTTCTCATAACAACTTCAGTGGCGATCTTCCTAGTTCCTTAAGCAC
genomic: ACAATGTCAATAGGAGATATCTTTGCTGATCATAAGTCACTGGCAACCTTgtaagatcgc ... ctttattcagGGACCTTTCTCATAACAACTTCAGTGGCGATCTTCCTAGTTCCTTAAGCAC
EST: gi|125145216|gb|EL180413.1|EL180413
EST:     CAATAGGAGATATCTTTGCTGATCATAAGTCACTGGCAACCTT                         GGACCTTTCTCATAACAACTTCAGTGGCGATCTTCCTAGTTCCTTAAGCAC
genomic: CAATAGGAGATATCTTTGCTGATCATAAGTCACTGGCAACCTTgtaagatcgc ... ctttattcagGGACCTTTCTCATAACAACTTCAGTGGCGATCTTCCTAGTTCCTTAAGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagcatagtcatatcacttccagtttccattgatctattgtttctttattcagGGACCTTTCTCATAACAACTTCAGTGGCGATCTTCCTAGTTCCTTAAGCACAGTGTCCACACTTTCCGTTCT
                             cattgat  putative branch site (score: 4)
                                   tctattgtttcttt  CT-rich tract
                                     tattgtttctttatt  TA-rich tract