1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggttctttgtctggtcaagcaagtttgctaaaacctttactgcttaatctataatattccctctcttatctaaaatctatattgacctattcttttggttaatcttcttcttctagTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
species | Arabidopsis thaliana |
transcript | AT4G21790.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGTACATGATAACAGCACTGTGGAGTTAGTTGGAAAGATATTTATCGCAG TTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAEST: gi|86078543|gb|DR374300.1|DR374300
genomic: GGTACATGATAACAGCACTGTGGAGTTAGTTGGAAAGATATTTATCGCAGgtaggttctt ... cttcttctagTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGA
EST: GGTACATGATAACAGCACTGT-GAGTTAGTTGGAAAGATATTTATCGCAG TTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAGEST: gi|164034477|gb|ES097267.1|ES097267
genomic: GGTACATGATAACAGCACTGTGGAGTTAGTTGGAAAGATATTTATCGCAGgtaggttctt ... cttcttctagTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
EST: GATATTTATCGCAG TTGTG-CTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAGEST: gi|124975892|gb|EL049351.1|EL049351
genomic: GATATTTATCGCAGgtaggttctt ... cttcttctagTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
EST: AAAGATATTTATCGCAG TTGTGTCTTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAGEST: gi|125276844|gb|EL290929.1|EL290929
genomic: AAAGATATTTATCGCAGgtaggttctt ... cttcttctagTTGTGTC-TTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
EST: AGTTAGTTGGAAAGATATTTATCGCAG TTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
genomic: AGTTAGTTGGAAAGATATTTATCGCAGgtaggttctt ... cttcttctagTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
tctcttatctaaaatctatattgacctattcttttggttaatcttcttcttctagTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
ttaatcttcttcttct CT-rich tract
tatctaaaatctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttctttgtctggtcaagcaagtttgctaaaacctttactgcttaatctataatattccctctcttatctaaaatctatattgacctattcttttggttaatcttcttcttctagTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA