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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaggccttatatatgtgtttccagtatatcttgacatttggttattgctttgtttttcattggcaaattgtattccgtctcagCATTCAGGTGTTCCTCTCAAAATCAAAAGGCTTGCCGAGGATCCAGAAAGATTCATATGGGCGGTTAGTATGGCACAGACACGATGCATCAGTATGCAAA

Basic information

species Arabidopsis thaliana
transcript AT4G20130.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86035259|gb|DR331012.1|DR331012
EST:     CTATTAGACAACAACAGAAACGAATCCTAGATTTTTGGGAAAAGAATTGG                         CATTCAGGTGTTCCTCTCAAAATCAAAAGGCTTGCCGAGGATCCAGAAAGA
genomic: CTATCAGACAACAACAGAAACGAATCCTAGATTTTTGGGAAAAGAATTGGgtaatgaggc ... tccgtctcagCATTCAGGTGTTCCTCTCAAAATCAAAAGGCTTGCCGAGGATCCAGAAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgacatttggttattgctttgtttttcattggcaaattgtattccgtctcagCATTCAGGTGTTCCTCTCAAAATCAAAAGGCTTGCCGAGGATCCAGAAAGATTCATATGGGCGGTTAGTATGGCACAGACACGATGCATCAGTATGCAAA
 tcttgac  putative branch site (score: 3)
                                            ttccgtctc  putative PPT
                                    aaattgtatt  TA-rich tract