1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttagcttttctttccttcacaaaatttctccaatctccattaactcttgcaaactttgacccttcaaagtggtctaaaacgtttatgacactattgcagGCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGTGATAGTTTCCGTGCTCTATTACCGATGGGAACCAAAGTAAAATGTCTTT
species | Arabidopsis thaliana |
transcript | AT4G19420.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAAT GCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGTEST: gi|116448741|gb|EG491333.1|EG491333
genomic: TAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAATgttagctttt ... actattgcagGCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGT
EST: TAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAAT GCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGTEST: gi|86031812|gb|DR327565.1|DR327565
genomic: TAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAATgttagctttt ... actattgcagGCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGT
EST: TAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAAT GCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGTEST: gi|125262057|gb|EL276142.1|EL276142
genomic: TAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAATgttagctttt ... actattgcagGCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGT
EST: AGCCGTTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAAT GCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCG
genomic: AGCCG-TTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAATgttagctttt ... actattgcagGCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCG
tcttgcaaactttgacccttcaaagtggtctaaaacgtttatgacactattgcagGCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGTGATAGTTTCCGTGCTCTATTACCGATGGGAACCAAAGTAAAATGTCTTT
gtctaaa putative branch site (score: 3)
aaacttt TA-rich tract