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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagatacattttctggaatctttttcaaccatccacaatcttcacttgcaaaattaaacactttcacttttcaacatcttgttccatttcacagttttcacttgcaaaattttctaactcggtttcttttcctctacgcagCGTTGTGGGTGGATTCTTCATCATTCTAGGACTCTATATGGTCACTTGGGCATCGTTTAGAGAGCGAAAAACAGCGGTTTCCGGGATTGGGATTGCGCCC

Basic information

species Arabidopsis thaliana
transcript AT4G19185.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19797736|gb|AU229435.1|AU229435
EST:     TCAGCTTTCCTATCGAGAATCTTTCTCGGTAGCCCCATTTATCTCGGAAG                         CGTTGTGGGTGGATTCTTCATCATTCTAGGACTCTATATGGTCACTTGGGC
genomic: TCAGCTTTCCTATCGAGAATCTTTCTCGGTAGCCCCATTTATCTCGGAAGgttagataca ... ctctacgcagCGTTGTGGGTGGATTCTTCATCATTCTAGGACTCTATATGGTCACTTGGGC
EST: gi|86080009|gb|DR375766.1|DR375766
EST:     TCAGCTTTCCTATCGAGAATCTTTCTCGGTAGCCCCATTTATCTCGGAAG                         CGTTGTGGGTGGATTCTTCATCATTCTAGGACTCTATATGGTCACTTGGGC
genomic: TCAGCTTTCCTATCGAGAATCTTTCTCGGTAGCCCCATTTATCTCGGAAGgttagataca ... ctctacgcagCGTTGTGGGTGGATTCTTCATCATTCTAGGACTCTATATGGTCACTTGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacagttttcacttgcaaaattttctaactcggtttcttttcctctacgcagCGTTGTGGGTGGATTCTTCATCATTCTAGGACTCTATATGGTCACTTGGGCATCGTTTAGAGAGCGAAAAACAGCGGTTTCCGGGATTGGGATTGCGCCC
                         ttctaac  putative branch site (score: 1)
                               ctcggtttcttttcct  CT-rich tract
                   aaaattttctaact  TA-rich tract