Sequence
atgc intronic sequence ATGC exonic sequencegtttttattttccctcatcgatgtgctttcaatggttccatgtgattaacttcctatggcctgattccggtaatttggtatgttgtttctttaaagGGTGGTGTGGGCTGTTCCATAAACTGTAGATGTGAAGGATGTAAGAACGCATTCGGCCGGAAAGATG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G14770.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G14770.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA10G39080.1 (Glycine max), 3'ss of exon 13
gtttttattttccctcatcgatgtgctttcaatggttccat-gtgattaacttc--ctatggcctgattccggta-atttggtatgttgtttctttaaagGGTGGTGTGGGCTGTTCCATAAACTGTAGATGTGAAGGATGTAAGAACGCATTCGGCCGGAAAGATG
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--------------------gttttctttctgctcttatatcatgtctgccttcagttttaacttgatttaggaacacttgttaatttttttttttaaagGGTGGTGTTGGTTGCTCCATAAGCTGTAGATGTGAAGGATGCAAGAACACATATGGTAGAAAGGATG
upper sequence: AT4G14770.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA20G28740.2 (Glycine max), 3'ss of exon 5
gtttttattttccctcatcgatgtgctttcaatggttccatgtgattaacttcctatggcctgattccggtaatttggtatgttgtttctttaaagGGTGGTGTGGGCTGTTCCATAAACTGTAGATGTGAAGGATGTAAGAACGCATTCGGCCGGAAAGATG
|| ||| || | | | ||| || | | | ||| || | | | | ||| | || | | || || ||| ||||||||||| || || ||| ||| |||||||||||||||||| |||||| ||| || | || ||||
--------gttttctccccgctcttatatca-tgcatgcctccaatt--tctcttttaacttcatttacaaacatttttttatt--ttttttgaagGGTGGTGTTGGTTGCTCCGTAAGCTGTAGATGTGAAGGATGCAAGAACACATATGGTAGAAAGGATG
upper sequence: AT4G14770.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA11G00920.1 (Glycine max), 3'ss of exon 9
gtttttattttccctcatcgatgtgctttcaatggttccatgtgattaacttcctatggcctgattccggtaatttggtatgttgtttctttaaagGGTGGTGTGGGCTGTTCCATAAACTGTAGATGTGAAGGATGTAAGAACGCATTCGGCCGGAAAGATG
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----------gttttcacccttgtcctatct-tgtatgcttgcaatt--tcagttataacatgagttacaaa---tggta-gtt-ttcttttgaagGGTGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGATGCAAGAATGCTTTTGGTAGAAAGGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgattaacttcctatggcctgattccggtaatttggtatgttgtttctttaaagGGTGGTGTGGGCTGTTCCATAAACTGTAGATGTGAAGGATGTAAGAACGCATTCGGCCGGAAAGATG
ttgtttcttt CT-rich tract
tttctttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttttattttccctcatcgatgtgctttcaatggttccatgtgattaacttcctatggcctgattccggtaatttggtatgttgtttctttaaagGGTGGTGTGGGCTGTTCCATAAACTGTAGATGTGAAGGATGTAAGAACGCATTCGGCCGGAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG