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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatgtcctgggttttccccttttgtttgttctcttatgcaaacaatgggatatataatcaagcaagaaattctgttattttacgagaaataaattctgatattttacagGAAAGAATATGTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAGCTTCCTCTCTCTATATCTGGCTTTCTGAAACAAGGATCTATAAACAAGGCCTA

Basic information

species Arabidopsis thaliana
transcript AT4G14716.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86028651|gb|DR324404.1|DR324404
EST:     ACACGACCATCTTCCTGCAAG                         GAAAGAATATGTCGATAACTTCATGGTCAATGCCTCTGCTTAGAGAGCTTC
genomic: ACACGACCATCTTCCTGCAAGgtacaatgtc ... tattttacagGAAAGAATATGTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAGCTTC
EST: gi|116403021|gb|EG445613.1|EG445613
EST:     GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG                         GAAAGAATATGTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAGCTTC
genomic: GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAGgtacaatgtc ... tattttacagGAAAGAATATGTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAGCTTC
EST: gi|125087037|gb|EL146309.1|EL146309
EST:     GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG                         GAAAGAATATGTCG
genomic: GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAGgtacaatgtc ... tattttacagGAAAGAATATGTCG
EST: gi|124916606|gb|EH990480.1|EH990480
EST:     GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG                         GAAAGAATATGTCGATAACTT
genomic: GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAGgtacaatgtc ... tattttacagGAAAGAATATGTCGATAACTT
EST: gi|125022400|gb|EL094669.1|EL094669
EST:     GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG                         GAAAGAATATGTCGATA
genomic: GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAGgtacaatgtc ... tattttacagGAAAGAATATGTCGATA
EST: gi|19741175|gb|AU226528.1|AU226528
EST:     GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG                         GAAAGAATATGGTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAGCTT
genomic: GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAGgtacaatgtc ... tattttacagGAAAGAATAT-GTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatcaagcaagaaattctgttattttacgagaaataaattctgatattttacagGAAAGAATATGTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAGCTTCCTCTCTCTATATCTGGCTTTCTGAAACAAGGATCTATAAACAAGGCCTA
                                       ttctgat  putative branch site (score: 3)
                              agaaataaattctgat  TA-rich tract