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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaatgttagcttcttcagagtggttaattcatcatatatatatttggttgattagaaaattgaaatatcttgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G14710.5
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14710.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G165998_T01 (Zea mays), 3'ss of exon 5
------------gtgcaatgttagcttcttcagagtggttaattcatcatatatatatttggttgattagaaaattgaaatatcttgttgag------cagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAG
             |    | |||  |  |    |      ||      | |||   |    | ||  | |   |||    | || || |  |      ||||||||||| || || |||||||| || |||||||||||||||||||| || || ||||| ||||| || ||
tcttctgttactttcttgtcttaagtcttctgtaaacaagaaccagctaaataacgacgctgctgcattgtggattttttt-tcctgctatgattcctcagGCAATGCGTCTATTTGTGGGTGAGCCTGTCTGGACACCATACAATCGTCCGCATGACCATCTCCCGGCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080820|gb|DR376577.1|DR376577
EST:     CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAG                         GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
genomic: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
EST: gi|124720239|gb|EH811641.1|EH811641
EST:     TGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAG                         GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGA
genomic: TGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGA
EST: gi|86082287|gb|DR378046.1|DR378046
EST:     CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAG                         GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
genomic: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
EST: gi|124889874|gb|EH968776.1|EH968776
EST:     CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAG                         GCAATGCGGCTTT-CGTGGGTGAAC
genomic: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAAC
EST: gi|164105215|gb|ES067936.1|ES067936
EST:     TAGACTCAGACAACTATATCAAG                         GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
genomic: TAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
EST: gi|124727145|gb|EH818547.1|EH818547
EST:     CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAG                         GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCG
genomic: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCG
EST: gi|86074670|gb|DR370427.1|DR370427
EST:     CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAG                         GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
genomic: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
EST: gi|125258671|gb|EL272756.1|EL272756
EST:     CGCTTCACCGTAGACTCAGACAACTATATCAAG                         GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
genomic: CGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
EST: gi|125294180|gb|EL308265.1|EL308265
EST:     TCAGACAACTATATCAAG                         GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
genomic: TCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcatcatatatatatttggttgattagaaaattgaaatatcttgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAG
                                          tcttgtt  CT-rich tract
        atatatatatttggtt  TA-rich tract