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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataacaaatattggttgattgtcacatttcaattttttccgactaacaaatcctgttttcatctttggagGCTCTGGATAATTTCAACACAGCAGTCATATCTCCAGTGTACTATGTTATGTTTACAACATTCACCATCTTAGCTAGTATGATCATGTTCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G13800.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G13800.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA05G28580.1 (Glycine max), 3'ss of exon 7
----------------------------gtaataacaaatattggttgattgtcacatttcaattttttccgactaacaaatcctgttttcatctttggagGCTCTGGATAATTTCAACACAGCAGTCATATCTCCAGTGTACTATGTTATGTTTACAACATTCACCATCTTAGCTAGTATGATCATGTTCAAG
                             ||| |  | ||  |  ||  ||  ||  | |    |    |    | |   ||  ||    ||| |||  ||||| |||| |  || ||||| |||||  |||| ||| | |||||||| ||||||||| ||||||||||||| || || || |||||||| |||
attgaaataagtgtgctgagtttgtattttaagacaatatgcttattagttaccaattatgttgtaaagctattttatttattttggaaacatgtttc-agGCTTTGGACACCTTTAACACTGCAGTTGTATCACCAATTTACTATGTCATGTTTACATCATTCACCATCTTTGCCAGCATAATCATGTTTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattgtcacatttcaattttttccgactaacaaatcctgttttcatctttggagGCTCTGGATAATTTCAACACAGCAGTCATATCTCCAGTGTACTATGTTATGTTTACAACATTCACCATCTTAGCTAGTATGATCATGTTCAAG
                         gactaac  putative branch site (score: 1)
                                   tcctgttttcatcttt  putative PPT
        acatttcaatttttt  TA-rich tract