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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcaattttcaatctccttttctcaatcctgacaatttcatgtgcatatctctcgtaaactcatacatgttggtgatgcagTTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAGCAATCCTGAATCTGAGGCCCATCTCAAATCACTTTTGCCTCACATAGAG

Basic information

species Arabidopsis thaliana
transcript AT4G13360.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116460916|gb|EG503508.1|EG503508
EST:     CCATCTGAAAAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCT                         TTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAG
genomic: CCATCTGAAAAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCTgtacgcaatt ... ggtgatgcagTTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAG
EST: gi|125037783|gb|EL110052.1|EL110052
EST:     CCATCTGAAAAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCT                         TTCTGAGGATCCTAATCAAG
genomic: CCATCTGAAAAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCTgtacgcaatt ... ggtgatgcagTTCTGAGGATCCTAATCAAG
EST: gi|124769284|gb|EH859414.1|EH859414
EST:     TTAAAGGAAGCCATTTTGTCAGCTAACCT                         TTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAG
genomic: TTAAAGGAAGCCATTTTGTCAGCTAACCTgtacgcaatt ... ggtgatgcagTTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAG
EST: gi|164028307|gb|ES198352.1|ES198352
EST:     AAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCT                         TTCTGAGGATCCTAATCAAGACATCCAAGC
genomic: AAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCTgtacgcaatt ... ggtgatgcagTTCTGAGGATCCTAATCAAGACATCCAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgacaatttcatgtgcatatctctcgtaaactcatacatgttggtgatgcagTTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAGCAATCCTGAATCTGAGGCCCATCTCAAATCACTTTTGCCTCACATAGAG
 tcctgac  putative branch site (score: 2)
       aatttcat  TA-rich tract