1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttttggcttcatctctttcagagtgcatgaaggatgtaaagtatataagaaccattgatgctctgcttatataatgttgttgtagcacatgcattcgttggtaataccatctaaattcttagggaggtaagtaaatgttgatgttttctgttgtgtgttatttcagTCAGGTACATCATTGAGTAGTTTAATGTCCACAAATGAGAAGCCACCAGAAGTGAAGCTGGAGACTGCTTTAAGCCTGATTGATTTTGATACTGATTTTG
species | Arabidopsis thaliana |
transcript | AT4G13350.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCCAAAACCCCCTGTCAGTAGAAATACCGATGCTTCAGCACATGCAAAG TCAGGTACATCAEST: gi|116423228|gb|EG465820.1|EG465820
genomic: CTCCAAAACCCCCTGTCAGTAGAAATACCGATGCTTCAGCACATGCAAAGgttttggctt ... gttatttcagTCAGGTACATCA
EST: CTCCAAAACCCCCTGTCAGTAGAAATACCGATGCTTCAGCACATGCAAAG TCAGGTACATCATTGAGTAGTTTAATGTCCACAAATGAGAAGCCACCAGAAEST: gi|124882621|gb|EH961523.1|EH961523
genomic: CTCCAAAACCCCCTGTCAGTAGAAATACCGATGCTTCAGCACATGCAAAGgttttggctt ... gttatttcagTCAGGTACATCATTGAGTAGTTTAATGTCCACAAATGAGAAGCCACCAGAA
EST: CCAAAACCCCCTGTCAGTAGAAATACCGATGCTTCAAGACACATGCAAAG TCAGGTACATCA
genomic: CCAAAACCCCCTGTCAGTAGAAATACCGATGCTTCA-G-CACATGCAAAGgttttggctt ... gttatttcagTCAGGTACATCA
taaattcttagggaggtaagtaaatgttgatgttttctgttgtgtgttatttcagTCAGGTACATCATTGAGTAGTTTAATGTCCACAAATGAGAAGCCACCAGAAGTGAAGCTGGAGACTGCTTTAAGCCTGATTGATTTTGATACTGATTTTG
ttatttc CT-rich tract
taagtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttggcttcatctctttcagagtgcatgaaggatgtaaagtatataagaaccattgatgctctgcttatataatgttgttgtagcacatgcattcgttggtaataccatctaaattcttagggaggtaagtaaatgttgatgttttctgttgtgtgttatttcagTCAGGTACATCATTGAGTAGTTTAATGTCCACAAATGAGAAGCCACCAGAAGTGAAGCTGGAGACTGCTTTAAGCCTGATTGATTTTGATACTGATTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA