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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtataatacaaactacaaaactcctgtccttttccgcattttatttcttgtccctgagactgatcactctatgcttatctttgtttttagGTAACAACAACTATATACAATATCCTACTTGGTAAACTGTACTGCGATCACCATGGGATAATGAAAATCCGTGGAAATCGCCAATATTCTTGTATGTTAA

Basic information

species Arabidopsis thaliana
transcript AT4G12460.1
intron # 6
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattttatttcttgtccctgagactgatcactctatgcttatctttgtttttagGTAACAACAACTATATACAATATCCTACTTGGTAAACTGTACTGCGATCACCATGGGATAATGAAAATCCGTGGAAATCGCCAATATTCTTGTATGTTAA
                      gactgat  putative branch site (score: 3)
                                      cttatctttgttttt  putative PPT
                                       ttatctttgttttta  TA-rich tract