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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtttcttcactgcttcatcccataacaatgtgcactttatgattctcttcaatcttagcaatctgtatttttatttttaatatggagaacctgagaccacttagatgatattctgataattgctcctaacagCTTACCTGTGGAGGACTAGCGGGATCTGCTGCTGCTTTCTTCACAACCCCATTTGATGTAGTAAAAACAAGATTACAAACTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G11440.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11440.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA05G37810.1 (Glycine max), 3'ss of exon 6
gtgtgtttcttcactgcttcatcccataacaatgtgcactttatgatt-ctcttcaatcttagcaatctgtatttttatttttaatatggagaacctgagaccacttagatgatattctgataattgctcctaacagCTTACCTGTGGAGGACTAGCGGGATCTGCTGCTGCTTTCTTCACAACCCCATTTGATGTAGTAAAAACAAGATTACAAACTCAG
                                 ||| | || ||| ||  || |   ||||| | |||  | ||||| | |  | |     |||  | |     ||  |||||| ||   |  ||| ||      || |    ||||||||| |||| |||||| | |||||||| ||||||||||| ||||||||  | || || |||||||| || |||
---------------------------------gtg-agttaatgtttgttcctggctcttaaccatcattttttttgtctc-attccaatgaatgtaa-----ctgggatgattttacaa--atttct----gtagTTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatatggagaacctgagaccacttagatgatattctgataattgctcctaacagCTTACCTGTGGAGGACTAGCGGGATCTGCTGCTGCTTTCTTCACAACCCCATTTGATGTAGTAAAAACAAGATTACAAACTCAG
                                 ttctgat  putative branch site (score: 3)
                                          ttgctcct  putative PPT
                              atattctgataatt  TA-rich tract