Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactctcactcgaataaattggtttcctttgccaaactattctgaaacttaatgttgctaactttgcttagtttcacttttcaacagCTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTGTGTGTGGCGAGGTGTACCGTCTGAGGCTACTGGGCGATTATCATCATCCAACTCGCATCGGCT

Basic information

species Arabidopsis thaliana
transcript AT4G10610.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116466690|gb|EG509282.1|EG509282
EST:     AGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTGACAAGAAG                         CTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTGTGTGT
genomic: AGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTGACAAGAAGgtgactctca ... ttttcaacagCTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTGTGTGT
EST: gi|124988697|gb|EL061065.1|EL061065
EST:     CTATCTACTGCACTAACATTGACAAGAAG                         CTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTGTGTGTGGCGAGGTG
genomic: CTATCTACTGCACTAACATTGACAAGAAGgtgactctca ... ttttcaacagCTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTGTGTGTGGCGAGGTG
EST: gi|125002624|gb|EL074893.1|EL074893
EST:     AGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTGACAAGAAG                         CTCACTCAAACCGACATTAAACTCTTCTTTGAGT
genomic: AGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTGACAAGAAGgtgactctca ... ttttcaacagCTCACTCAAACCGACATTAAACTCTTCTTTGAGT
EST: gi|116466689|gb|EG509281.1|EG509281
EST:     AGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTGACAAGAAG                         CTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTGTGTGT
genomic: AGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTGACAAGAAGgtgactctca ... ttttcaacagCTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTGTGTGT
EST: gi|116412046|gb|EG454638.1|EG454638
EST:     AGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTGACAAGAAG                         CTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTGTGTG
genomic: AGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTGACAAGAAGgtgactctca ... ttttcaacagCTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTGTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaactattctgaaacttaatgttgctaactttgcttagtttcacttttcaacagCTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTGTGTGTGGCGAGGTGTACCGTCTGAGGCTACTGGGCGATTATCATCATCCAACTCGCATCGGCT
                       tgctaac  putative branch site (score: 1)
                                       tttcacttttc  putative PPT
            aaacttaat  TA-rich tract