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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctttctcaagcaacacagtactggattattcatggtaggtgacttttctgataccatttttctctattctgccattcttagGTTGGTCAGTTGAGGTTAACACCTCGGGTCCTTGTTGGTCATAGCTTTGGGGGGAAAG

Basic information

species Arabidopsis thaliana
transcript AT4G10030.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125262938|gb|EL277023.1|EL277023
EST:     AGAGAGGTCCACACTCGGTTGCTACTACTGCTTCTGATGTTCTAAAACTT                         GTTGGTCAGTTGAGGTTAACACCTCGGGTCCTTGTTGGTCATAGCTTTG
genomic: AGAGAGGTCCACACTCGGTTGCTACTACTGCTTCTGATGTTCTAAAACTTgtaagtttct ... ccattcttagGTTGGTCAGTTGAGGTTAACACCTCGGGTCCTTGTTGGTCATAGCTTTG
EST: gi|86019776|gb|DR315522.1|DR315522
EST:     AGAGAGGTCCACACTCGGTTGCTACTACTGCTTCTGATGTTCTAAAACTT                         GTTGGTCAGTTNNNNNTAACACCTCGGGTCCTTGTTGGTCATAGNTTTGGG
genomic: AGAGAGGTCCACACTCGGTTGCTACTACTGCTTCTGATGTTCTAAAACTTgtaagtttct ... ccattcttagGTTGGTCAGTTGAGGTTAACACCTCGGGTCCTTGTTGGTCATAGCTTTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcatggtaggtgacttttctgataccatttttctctattctgccattcttagGTTGGTCAGTTGAGGTTAACACCTCGGGTCCTTGTTGGTCATAGCTTTGGGGGGAAAG
                   ttctgat  putative branch site (score: 3)
                              tttttctctattctgc  putative PPT
                             atttttct  TA-rich tract