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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacgcaatatgactactactaaactaccttcgagcaaagcgataatctttatatcaatcatgcggttgaccattttttggattttgtattgtagACATTAACTCAAGCATTGGCAACAGCTCGGGAGCACCTTGCGAGAAGTCTTCTTACATAAATTTTCATCGTGGGAGCGAAATGATATATTCATAAGCCCT

Basic information

species Arabidopsis thaliana
transcript AT4G08520.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502441|gb|HO207981.1|HO207981
EST:     GGAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGTTCACTCTCTGAACAG                         ACATTAACTCAAGCA
genomic: GGAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGTTCACTCTCTGAACAGgtgagacgca ... tgtattgtagACATTAACTCAAGCA
EST: gi|47828401|gb|CK118085.1|CK118085
EST:     GGAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGTTCACTCTCTGAACAG                         ACATTAACTCAAGCATTGGCAACAGCTCGGGAGCACCTTGCGAGAAGTCTT
genomic: GGAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGTTCACTCTCTGAACAGgtgagacgca ... tgtattgtagACATTAACTCAAGCATTGGCAACAGCTCGGGAGCACCTTGCGAGAAGTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgataatctttatatcaatcatgcggttgaccattttttggattttgtattgtagACATTAACTCAAGCATTGGCAACAGCTCGGGAGCACCTTGCGAGAAGTCTTCTTACATAAATTTTCATCGTGGGAGCGAAATGATATATTCATAAGCCCT
                        ggttgac  putative branch site (score: 4)
     atctttatatcaat  TA-rich tract