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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatctgatagtgatcattttaatttttattgccaggcatgattatgttatctgatttatgtgcttcctctttctccgtatagTCATTCGTCGCCATCAGTGCTGATTCCTGCTCTTCGTACCATTGGAAATATTGTAACCGGGGATGATCTACAGACTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G02150.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164155841|gb|ES075409.1|ES075409
EST:     TGAAGCAGGAGTTGTTCCTCGCCTCATCCAGCTCTTAGG                         TCATTCGTCGCCATCAGTGCTGATTCCTGCTCTTCGTACCATTGGAAATAT
genomic: TGAAGCAGGAGTTGTTCCTCGCCTCATCCAGCTCTTAGGgtaagcatct ... ctccgtatagTCATTCGTCGCCATCAGTGCTGATTCCTGCTCTTCGTACCATTGGAAATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgccaggcatgattatgttatctgatttatgtgcttcctctttctccgtatagTCATTCGTCGCCATCAGTGCTGATTCCTGCTCTTCGTACCATTGGAAATATTGTAACCGGGGATGATCTACAGACTCAG
                     atctgat  putative branch site (score: 4)
                           tttatgtgcttcctct  CT-rich tract
             attatgttat  TA-rich tract