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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgctcatatctctcgacagttttcatatacaaccttaaattctgagttgcctattgaatccgcgatctgttttcagATATGTTGCGCCTGAATATGCAATGACGGGACACCTACTCGTCAAGAGTGATGTTTATAGTTACGGTGTGGTCCTTCTCGAATTGTTAACTGGTAGAAAA

Basic information

species Arabidopsis thaliana
transcript AT4G02010.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02010.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA02G01480.1 (Glycine max), 3'ss of exon 5
gtgagttgctcatatctctcgacagttttcatatacaaccttaaattctgagttgcctattgaatccgcgatctgttttcagATATGTTGCGCCTGAATATGCAATGACGGGACACCTACTCGTCAAGAGTGATGTTTATAGTTACGGTGTGGTCCTTCTCGAATTGTTAACTGGTAGAAAA
|| |||| |     | |||      |  |  |      | || |||| | | ||    ||  |||  |  |    | |  || ||||| |||||||||||||| ||||| |||||||| || || || || ||||||||||| ||||| || ||| | || ||| |||| |  || || |||
gttagtttcattcttttctttcttatacttgttattttcatttaatt-taaatttaagatgaaat--gaaactgttatatagGTATGTAGCGCCTGAATATGCTATGACTGGACACCTGCTAGTTAAAAGCGATGTTTATAGCTACGGCGTTGTCTTGCTGGAACTGTTGATCGGAAGGAAA

upper sequence: AT4G02010.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA03G37910.1 (Glycine max), 3'ss of exon 7
gtgagttgctcatatctctcgacagttttca----tatacaaccttaaattctgagttgcctattgaatccgcgatctgttttcagATATGTTGCGCCTGAATATGCAATGACGGGACACCTACTCGTCAAGAGTGATGTTTATAGTTACGGTGTGGTCCTTCTCGAATTGTTAACTGGTAGAAAA
|| |||   | |||| |     || | ||        ||   || || | | | | ||    |    |   |  |  | | |  || || ||||| ||||||||||| ||||| ||||||||||| || || ||||| |||||||| || ||||| ||| | || ||| || | ||||| || || 
gttagtc-ttgatatattctttcattctttgacttgttatttccatataatttaattttttaaggttaaatgaaacttctatgtagGTACGTTGCTCCTGAATATGCCATGACTGGACACCTACTTGTTAAAAGTGACGTTTATAGCTATGGTGTTGTCTTGCTGGAACTGCTTACTGGCAGGAAG

upper sequence: AT4G02010.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA19G40500.1 (Glycine max), 3'ss of exon 6
gtgagt-tgctcatatctctcgacagttttcatatacaaccttaaattctgagttgcctattgaatccgcgatctgttttcagATATGTTGCGCCTGAATATGCAATGACGGGACACCTACTCGTCAAGAGTGATGTTTATAGTTACGGTGTGGTCCTTCTCGAATTGTTAACTGGTAGAAAA
|| ||| |    ||||        ||  ||  |||    | |  ||||     |||     | ||      |  | | |  || || || || ||||||||||| ||||| || |||||||| || || |||||||||||||| || ||||| ||| | || ||| || | |||||||| || 
gttagtcttgatatattctatcttagacttgttatttg-catataatttaattttgtaaggttaaatta-aacttctatgtagGTACGTAGCTCCTGAATATGCCATGACTGGGCACCTACTTGTTAAAAGTGATGTTTATAGCTATGGTGTTGTCTTGCTGGAACTGCTTACTGGTAGGAAG

upper sequence: AT4G02010.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: PP1S478_19V6.1 (Physcomitrella patens), 3'ss of exon 7
-------------------------------------------------------gtgagttgctcatatctctcgacagttttcatatacaacc-----ttaaattctgagttgc--ctattgaatccgcgatctgtttt--cagATATGTTGCGCCTGAATATGCAATGACGGGACACCTACTCGTCAAGAGTGATGTTTATAGTTACGGTGTGGTCCTTCTCGAATTGTTAACTGGTAGAAAA
                                                            || ||  |         || |||  || ||  ||      | ||||     ||| |  || ||   |   |  |||  | |  ||||||||| || |||||||| || ||||| ||||||||||| || || |||||||| || || |  || || ||  |  | || ||  |  | || || || 
gtaattattacgttcttttccacaagttacttcttgtacgagaatcaattttagacctgatttcttgtcctctaaatcaatttgaatgtattactagaattcaaatgtcttgtttctactcttatgtttactttcttgtctgacagATATGTGGCACCTGAATACGCCATGACTGGACACCTACTGGTGAAAAGTGATGTCTACAGCTTTGGAGTAGTGTTGTTAGAGTTACTCTCAGGCAGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatatacaaccttaaattctgagttgcctattgaatccgcgatctgttttcagATATGTTGCGCCTGAATATGCAATGACGGGACACCTACTCGTCAAGAGTGATGTTTATAGTTACGGTGTGGTCCTTCTCGAATTGTTAACTGGTAGAAAA
                                            tctgttttc  CT-rich tract
             ttaaattct  TA-rich tract