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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagatcattgtctcactaggaacactcaaaatttggttatggttttaaattagagcattttggtgatgtttttattggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGGCATATCCTACACCGAAATGTTCGAGGAAATGCGTTAGCGACAACAAAC

Basic information

species Arabidopsis thaliana
transcript AT4G01610.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164164966|gb|ES022823.1|ES022823
EST:     CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAA
genomic: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAA
EST: gi|116481390|gb|EG523982.1|EG523982
EST:     GCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
genomic: GCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: gi|125269021|gb|EL283106.1|EL283106
EST:     GGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
genomic: GGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: gi|125247356|gb|EL261441.1|EL261441
EST:     CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGA
genomic: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGA
EST: gi|124959506|gb|EL034210.1|EL034210
EST:     TAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
genomic: TAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: gi|124887245|gb|EH966147.1|EH966147
EST:     CGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
genomic: CGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: gi|125274167|gb|EL288252.1|EL288252
EST:     TGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
genomic: TGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: gi|164005614|gb|ES000292.1|ES000292
EST:     CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTG
genomic: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTG
EST: gi|125326102|gb|EL340182.1|EL340182
EST:     TTCGTATAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTG
genomic: TTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTG
EST: gi|125312919|gb|EL327004.1|EL327004
EST:     TTTTCGTATAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
genomic: TTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: gi|164180592|gb|ES010126.1|ES010126
EST:     CAATTGCTGCTTGGCAATAC-TTTCGTATAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAA
genomic: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAA
EST: gi|164182910|gb|ES174454.1|ES174454
EST:     TTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
genomic: TTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: gi|124819951|gb|EH904817.1|EH904817
EST:     CAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
genomic: CAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: gi|164091381|gb|ES206533.1|ES206533
EST:     AATTGTCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGA
genomic: AATTG-CTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGA
EST: gi|301501566|gb|HO207106.1|HO207106
EST:     CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG                         TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
genomic: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggttatggttttaaattagagcattttggtgatgtttttattggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGGCATATCCTACACCGAAATGTTCGAGGAAATGCGTTAGCGACAACAAAC
     ttatggttttaaatta  TA-rich tract