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gtaataatactaatattcaattgaattaccaacttaagactaataatccaaagcctaatctagtttttttttttcttctcaattcagAACATTTCTTTATCAGTAAATGATCTCCTAGCTTGTTGTGGATTCCGTTGTGGTGATGGTTGTGACGGTGGCTATCCAATTGCTGCTTGGCAATACTTTT
species | Arabidopsis thaliana |
transcript | AT4G01610.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATG AACATTTCTTTATCAGTAAATGATCTCTTAGCTTGTTGTGGATTCCGTTGTEST: gi|164172738|gb|ES109591.1|ES109591
genomic: TTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATGgtaataatac ... ctcaattcagAACATTTCTTTATCAGTAAATGATCTCCTAGCTTGTTGTGGATTCCGTTGT
EST: TTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATG AACATTTCTTTAEST: gi|301501566|gb|HO207106.1|HO207106
genomic: TTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATGgtaataatac ... ctcaattcagAACATTTCTTTA
EST: TTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATG AACATTTCTTTATCAGTAAATGATCTCCTAGCTTGTTGTGGATTCCGTTGTEST: gi|125136528|gb|EL176558.1|EL176558
genomic: TTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATGgtaataatac ... ctcaattcagAACATTTCTTTATCAGTAAATGATCTCCTAGCTTGTTGTGGATTCCGTTGT
EST: TCCAATTTGGCATG AACATTTCTTTATCAGTAAATCGATCTCCTAGCTTGTTGTGGATTCCGTTGEST: gi|164195662|gb|ES002027.1|ES002027
genomic: TCCAATTTGGCATGgtaataatac ... ctcaattcagAACATTTCTTTATCAGTAAAT-GATCTCCTAGCTTGTTGTGGATTCCGTTG
EST: TTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATG AACATTTCTTTATCAGTAAATGATCTCEST: gi|86059237|gb|DR354994.1|DR354994
genomic: TTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATGgtaataatac ... ctcaattcagAACATTTCTTTATCAGTAAATGATCTC
EST: TTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATG AACATTTCTTTATCAGTAAATGATCTCTTAGCTTGTTGTGGATTACCGTTG
genomic: TTGGTGCTGTTGAATCACTATCAGATAGATTCTGTATCCAATTTGGCATGgtaataatac ... ctcaattcagAACATTTCTTTATCAGTAAATGATCTCCTAGCTTGTTGTGGATT-CCGTTG
cttaagactaataatccaaagcctaatctagtttttttttttcttctcaattcagAACATTTCTTTATCAGTAAATGATCTCCTAGCTTGTTGTGGATTCCGTTGTGGTGATGGTTGTGACGGTGGCTATCCAATTGCTGCTTGGCAATACTTTT
cctaatctagtttttt CT-rich tract
taatctagtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatactaatattcaattgaattaccaacttaagactaataatccaaagcctaatctagtttttttttttcttctcaattcagAACATTTCTTTATCAGTAAATGATCTCCTAGCTTGTTGTGGATTCCGTTGTGGTGATGGTTGTGACGGTGGCTATCCAATTGCTGCTTGGCAATACTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT