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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttataatcgtattaatgaacatttgaagtacgtggatcgtttaatttgctcacagaatatattgtagcagGAACGACGAGCCACGAGGGAGCATGCAAGCCGCGATTTTAACCAGCCACGGACTGAAATTTCACCGGCTGTGGCTGAGACGAGCGAAAGTGACAGTTCAA

Basic information

species Arabidopsis thaliana
transcript AT4G01330.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124921172|gb|EH994815.1|EH994815
EST:     GGGTCATATTTATACACATGCTTGAAGCTGAAGACTTGTTCTATCGTGAC                         GAACGACGAGCCACGAGGGAGCATG
genomic: GGGTCATA-TTATACACATGCTTGAAGCTGAAGACTTGTTCTATCGTGACgtaagtctta ... attgtagcagGAACGACGAGCCACGAGGGAGCATG
EST: gi|125218758|gb|EL232841.1|EL232841
EST:     ACTTGTTCTATCGTGAC                         GAACGACGAGCCACGAGGGAGCATGCAAGCCGCGATTTTAACCAGCCACGG
genomic: ACTTGTTCTATCGTGACgtaagtctta ... attgtagcagGAACGACGAGCCACGAGGGAGCATGCAAGCCGCGATTTTAACCAGCCACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaacatttgaagtacgtggatcgtttaatttgctcacagaatatattgtagcagGAACGACGAGCCACGAGGGAGCATGCAAGCCGCGATTTTAACCAGCCACGGACTGAAATTTCACCGGCTGTGGCTGAGACGAGCGAAAGTGACAGTTCAA
                               tgctcac  putative branch site (score: 2)
 aatatattgta  TA-rich tract