1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaggtgaacctaaaacttttgcatgtgatccaatctctccttttttttttgctgcaaactaagcgttatattaagcagttcaacatcatttaggtgaaattgtttcatcatacggcttctgttgttcttagGTCCTTCAAATTTTGGAGCTTTACCGTCGCATATATGAAGAATATCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGTG
species | Arabidopsis thaliana |
transcript | AT3G62120.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGCAGATGAAGAG GTCCTTCAAATTTTGGAGCTTTACCGTCGCATATATGAAGAATATCTTGCAEST: gi|125257834|gb|EL271919.1|EL271919
genomic: AAGCAGATGAAGAGgtaggtgaac ... ttgttcttagGTCCTTCAAATTTTGGAGCTTTACCGTCGCATATATGAAGAATATCTTGCA
EST: CACACTGCATTCGCCACAAAAGCAGAAGCAGATGAAGAG GTCCTTCAAATTTTGGAGCTTTACCGTCGC
genomic: CACACTGCATTCGCCACAAAAGCAGAAGCAGATGAAGAGgtaggtgaac ... ttgttcttagGTCCTTCAAATTTTGGAGCTTTACCGTCGC
agttcaacatcatttaggtgaaattgtttcatcatacggcttctgttgttcttagGTCCTTCAAATTTTGGAGCTTTACCGTCGCATATATGAAGAATATCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGTG
cttctgttgttctt CT-rich tract
aaattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgaacctaaaacttttgcatgtgatccaatctctccttttttttttgctgcaaactaagcgttatattaagcagttcaacatcatttaggtgaaattgtttcatcatacggcttctgttgttcttagGTCCTTCAAATTTTGGAGCTTTACCGTCGCATATATGAAGAATATCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT