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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgctactttccttgtatgtttataatctcgttctgctcatatttttgtctaaacaacatgaaacatatttagGTTGAGTGGGATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAGTATCCTTATAACT

Basic information

species Arabidopsis thaliana
transcript AT3G61710.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61710.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os03g44200.2 (Oryza sativa), 3'ss of exon 7
-------------------------------------gtaagttttgctactttccttgtat---gtttataatct---cgttctgctcatatt-----tttgtct-----aaacaac-atgaaacatattt---agGTTGAGTGGGATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAGTATCCTTATAACT
                                      ||  ||||  | ||||||||| ||    || |  || |    |   || |||| ||     ||||| |      ||||||  ||  ||   |||   |||| |||||||||||||| ||||||||||||||||| ||   ||||||  | ||||| |||  | | || |||   ||||| ||| |              
gtaattatgcaaaatgtgcagatatcacgtccattcactatcttttagtgctttccttgaattctattcaagatgtacatggaatgttcatgttgatcctttgtgttaatgtaacaactgtgttactcttttcttagGTGGAGTGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTGCATACCATGGCTCAGTACTTCTTCCCAAAATTTGA--------------

upper sequence: AT3G61710.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os01g48920.1 (Oryza sativa), 3'ss of exon 6
gtaagttttgctactttccttgtatgtttataatctcgttctgctcatatttttgtctaaacaacatgaaacatattt---agGTTGAGTGGGATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAGTATCCTTATAACT
|||| || ||| |  ||   |  |  | ||  |  || |  || |      ||||| |||  ||  ||| ||   |||   ||||||| ||||||||||| |||||||||||||| || ||   ||||||  | ||||| |||  | | || |||   ||||| ||| |              
gtaa-ttatgcaaaatt---tacagatataccacatc-tcatgtttgatcctttgt-taataaatctgatacccttttcttagGTTGAATGGGATGAGATAAATGCTGCTTGGGGTCAGGCTGCTCTTCTTTTGCATACCATGGCTCAGTACTTCACCCCAAAATTTGA--------------

upper sequence: AT3G61710.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G092112_T01 (Zea mays), 3'ss of exon 6
gtaagttttgctactttcc--ttgtatgtttataatctcgttctgctcatatttttgtctaaacaacatgaaacatatttagGTTGAGTGGGATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAGTATCCTTATAACT
|||| || | ||  || |     | ||   || ||  | ||    || ||| |     ||    |  || |    | |  ||||||||||||||||||| |||||||| ||||| || ||    || ||  | ||||| |||  | | ||||||   ||||| || ||              
gtaa-ttatactgattgcaaaacgcatagatacaactttgtgtcact-atactcggcgcttctgataataa----tgtacagGTTGAGTGGGATGAGATAAATGCTGCATGGGGTCAGGCTGCACTGCTGTTGCATACCATGGCTCAGTATTTCACCCCAAAATTCCA--------------

upper sequence: AT3G61710.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA04G26840.1 (Glycine max), 3'ss of exon 6
------------------------gtaagttttgctactttccttgtatgttt--ataatctcgttctgctcatatttttgtctaaacaacatgaaacatatttagGTTGAGTGGGATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAGTATCCTTATAACT
                         | | ||     | ||| |||    ||||  ||| |   | | || | ||  | ||  ||       ||||||  | |||||||||| ||||||||||| |||||||| ||||||||||| || || || || ||||| |||||  | |||||||| || ||||||||              
ttatcctagagaattttcttaatcttgaattgaataatttttcttcctagtttgaatatttaagctttgattatgatgttcacttt----tatgaaa--tgtttagGTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCA--------------

upper sequence: AT3G61710.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA11G21490.1 (Glycine max), 3'ss of exon 6
------------------gtaagttttgctactttccttgtatgtttataatctcgttct----gctcatatttttgtctaaacaacatgaaacatatttagGTTGAGTGGGATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAGTATCCTTATAACT
                   | | | |||        | | | | ||  || | |   | |    |||   ||| |  | | |  |  ||||||  | |||||||||| ||||||||||| |||||||| ||||||||||| || || || || || || |||||  | |||||||| || ||||||||              
tttatcctagagaattttcttaatcttgaactgaatcctttttcttcctagtttgaatattgaagctttgattatgatgttactattatgaaa--tgtttagGTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCACACTATGTGCCAGTATTTCCGACCGAAGTTTCA--------------

upper sequence: AT3G61710.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv15s0046g00950.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------gtaagttttgctactttccttgtatgtttataatctcgttctg-ctcatatttttgtctaaacaacatgaaacatatttagGTTGAGTGGGATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAGTATCCTTATAACT
                        ||  ||    ||||||||||| || ||   | |   |  | | || | |  ||| |||  ||     |||||||||  ||||||| ||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||  | | |||||||| |||||||| ||              
tatgtcatcaactagtatacagcttattttagaatactttccttg-atattggaactgaggcaccgactaagaagtttatctgtactgtg-gaaacatat--agGTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTTCTTCTCCATACAATGGTTCAATATTTCCGACCAAAGTTCCA--------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttataatctcgttctgctcatatttttgtctaaacaacatgaaacatatttagGTTGAGTGGGATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAGTATCCTTATAACT
                             gtctaaa  putative branch site (score: 3)
                     atatttttgtctaaa  TA-rich tract