1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atttacttaatctatatcccttacgttgcacaactacttcatcttcctcaagtttttttctctaactaatgctttgtggattgtttactgtaatagggagACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAACTCATGGACCTGAGGAAAGACTAAGCTCCTTTAGTGCATTTAGCCAACCTTAT
species | Arabidopsis thaliana |
transcript | AT3G60820.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGGAG ACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCEST: gi|152034904|gb|BP839480.2|BP839480
genomic: GGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGTAAgttgtcctat ... taatagggagACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACC
EST: GGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGGAG ACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAACTCAEST: gi|125302816|gb|EL316901.1|EL316901
genomic: GGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGTAAgttgtcctat ... taatagggagACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAACTCA
EST: GGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGGAG ACAAGCTTGAGATTAEST: gi|86020250|gb|DR315996.1|DR315996
genomic: GGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGTAAgttgtcctat ... taatagggagACAAGCTTGAGATTA
EST: GGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGGAG ACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAACTCAEST: gi|86078317|gb|DR374074.1|DR374074
genomic: GGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGTAAgttgtcctat ... taatagggagACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAACTCA
EST: GGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGGAG ACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAACTCA
genomic: GGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGTAAgttgtcctat ... taatagggagACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAACTCA
cctcaagtttttttctctaactaatgctttgtggattgtttactgtaatagggagACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAACTCATGGACCTGAGGAAAGACTAAGCTCCTTTAGTGCATTTAGCCAACCTTAT
aactaat putative branch site (score: 2)
agttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttacttaatctatatcccttacgttgcacaactacttcatcttcctcaagtttttttctctaactaatgctttgtggattgtttactgtaatagggagACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAACTCATGGACCTGAGGAAAGACTAAGCTCCTTTAGTGCATTTAGCCAACCTTAT
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