1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaacatttacttaatctatatcccttacgttgcacaactacttcatcttcctcaagtttttttctctaactaatgctttgtggattgtttactgtaatagGGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAACTCATGGACCTGAGGAAAGACTAAGCTCCTTTAGTGCATTTAGCCAACC
species | Arabidopsis thaliana |
transcript | AT3G60820.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACT GGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAAEST: gi|86020250|gb|DR315996.1|DR315996
genomic: ACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTgtaagttgtc ... actgtaatagGGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAA
EST: ACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACT GGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAAEST: gi|124869035|gb|EH953472.1|EH953472
genomic: ACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTgtaagttgtc ... actgtaatagGGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAA
EST: GTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACT GGAGACAAGCTTGAGATTATGATACTTAAEST: gi|152034904|gb|BP839480.2|BP839480
genomic: GTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTgtaagttgtc ... actgtaatagGGAGACAAGCTTGAGATTATGATACTTAA
EST: ACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACT GGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAAEST: gi|125302816|gb|EL316901.1|EL316901
genomic: ACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTgtaagttgtc ... actgtaatagGGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAA
EST: ACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACT GGAGACAAGCTTGAGATTAEST: gi|124807778|gb|EH894182.1|EH894182
genomic: ACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTgtaagttgtc ... actgtaatagGGAGACAAGCTTGAGATTA
EST: CAGAGAGGGATATCTACACT GGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAAEST: gi|124901421|gb|EH975501.1|EH975501
genomic: CAGAGAGGGATATCTACACTgtaagttgtc ... actgtaatagGGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAA
EST: ACAGAGAGGGATATCTACACT GGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAAEST: gi|164131311|gb|ES105295.1|ES105295
genomic: ACAGAGAGGGATATCTACACTgtaagttgtc ... actgtaatagGGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAA
EST: ACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACT GGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACC
genomic: ACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTgtaagttgtc ... actgtaatagGGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACC
tcttcctcaagtttttttctctaactaatgctttgtggattgtttactgtaatagGGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAACTCATGGACCTGAGGAAAGACTAAGCTCCTTTAGTGCATTTAGCCAACC
aactaat putative branch site (score: 2)
aagttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacatttacttaatctatatcccttacgttgcacaactacttcatcttcctcaagtttttttctctaactaatgctttgtggattgtttactgtaatagGGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAGACCGAACTCATGGACCTGAGGAAAGACTAAGCTCCTTTAGTGCATTTAGCCAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - -acaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaat