1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagaacgtttctcccattccaagtaattagatctttcttcgtctttgtgagggtttgagttttcccataaatcatgtgtagGAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG
species | Arabidopsis thaliana |
transcript | AT3G58780.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATGAGCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGG GAAATGGAGTTGCAACACAATAEST: gi|164021652|gb|ES170976.1|ES170976
genomic: AATGAGCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGGgtaagaacgt ... tcatgtgtagGAAATGGAGTTGCAACACAATA
EST: TAGAGTATATGCAGAAGAGG GAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG
genomic: TAGAGTATATGCAGAAGAGGgtaagaacgt ... tcatgtgtagGAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG
ttagatctttcttcgtctttgtgagggtttgagttttcccataaatcatgtgtagGAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG
ataaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacgtttctcccattccaagtaattagatctttcttcgtctttgtgagggtttgagttttcccataaatcatgtgtagGAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG