1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgattacttgggtgacaacttcaaattttaggttatgagactaatcgtctaaaaatatgaattattttctcacattaatgtatttgatgttacatgcagTTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAG
species | Arabidopsis thaliana |
transcript | AT3G58140.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCTGATATACGATTTTTCTGGTCATCCGAATGAACGATTCACGTCCCAG TTTGGAAAAGGAGAAEST: gi|116411244|gb|EG453836.1|EG453836
genomic: ACCTGATATACGATTTTTCTGGTCATCCGA-TGAACGATTCACGTCCCAGgtgattactt ... ttacatgcagTTTGGAAAAGGAGAA
EST: TACCTGATATACGATTTTTCTGGTCATCCGATGAACGATTCACGTCCCAG TTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAG
genomic: TACCTGATATACGATTTTTCTGGTCATCCGATGAACGATTCACGTCCCAGgtgattactt ... ttacatgcagTTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAG
tcgtctaaaaatatgaattattttctcacattaatgtatttgatgttacatgcagTTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAG
taaaaatatgaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattacttgggtgacaacttcaaattttaggttatgagactaatcgtctaaaaatatgaattattttctcacattaatgtatttgatgttacatgcagTTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG