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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaacaaagctctttagtcatatgagtcattattacactgtaagttgtcagattaaaagtgggaaaacaatatttacttttgctgcagATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGGGCATAGCTTATTGCCTTGACCATATGCACGGACTCAAGCCACCTATAGT

Basic information

species Arabidopsis thaliana
transcript AT3G56050.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G56050.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv13s0067g01550.t01 (Vitis vinifera), 3'ss of exon 8
---------gtaagtaacaaagctctttagtcatatgagtcattattacactgtaagttgtcagattaaaagtgggaaaac-aatatttacttttgctgcagATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGGGCATAGCTTATTGCCTTGACCATATGCACGGACTCAAGCCACCTATAGT
          |   |||  |   |  ||  |||||||   ||||||     |||    | |  | || |  |   ||   | |||  |      | ||||||  |||||| | |||||||||||||||| ||||||||| |||   ||||||||||| || || | |||  ||||||| |||  | | |  || ||||||| 
tttatgcctatgtttaaggataattatttttcatatg--ccattatccttttgttgactatttgctttagggcaagatctctaattctggtgaatcctgcagTAAAAGAAGCTGAACACTTGGACTGGGCAATGCGGCTGAGAGCTGCAATGGGCATGGCATACTACCTCAACCATATCCACCAATTGACCCCGCCTATAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124874161|gb|EH955806.1|EH955806
EST:     CTTGGTCTTTGAATATGCATCAAACGGAACAGTCTTTGAACATTTACACT                         ATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGG
genomic: CTTGGTCTTTGAATATGCATCAAACGGAACAGTCTTTGAACATTTACACTgtaagtaaca ... tttgctgcagATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGG
EST: gi|86054312|gb|DR350069.1|DR350069
EST:     CTTGGTCTTTGAATATGCATCAAACGGAACAGTCTTTGAACATTTACACT                         ATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCCATGG
genomic: CTTGGTCTTTGAATATGCATCAAACGGAACAGTCTTTGAACATTTACACTgtaagtaaca ... tttgctgcagATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGG
EST: gi|124743861|gb|EH835023.1|EH835023
EST:     GGAACAGTCTTTGAACATTTACACT                         ATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGG
genomic: GGAACAGTCTTTGAACATTTACACTgtaagtaaca ... tttgctgcagATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGG
EST: gi|86054311|gb|DR350068.1|DR350068
EST:     CTTGGTCTTTGAATATGCATCAAACGGAACAGTCTTTGAACATTTACACT                         ATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCCATGG
genomic: CTTGGTCTTTGAATATGCATCAAACGGAACAGTCTTTGAACATTTACACTgtaagtaaca ... tttgctgcagATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGG
EST: gi|125164438|gb|EL191135.1|EL191135
EST:     TTGGTCTTTGAATATTGCATCAAACGGAACAGTCTTTGAACATTTACACT                         ATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAA
genomic: TTGGTCTTTGAATA-TGCATCAAACGGAACAGTCTTTGAACATTTACACTgtaagtaaca ... tttgctgcagATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacactgtaagttgtcagattaaaagtgggaaaacaatatttacttttgctgcagATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGGGCATAGCTTATTGCCTTGACCATATGCACGGACTCAAGCCACCTATAGT
                                       tttactttt  CT-rich tract
                              aaaacaatatttactt  TA-rich tract