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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgattctgttcttgtacaacttcagcttctctgttctttttctctttttagaatctttttctattagcttgatcagttacatcagtctatcctatacagttcaaaaaatttaaagttgggttactttttttatttatttgatgggtaaatgaacttgcagGCTCTCAAGGAAATGGCGGAAAAGAATGGAGGTAAAATAACATGTCCAAGGACAGGGCTTGTCTGCAACTACACGGAGTTAGTTAAGGCATATATATCAT

Basic information

species Arabidopsis thaliana
transcript AT3G55070.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124751637|gb|EH841767.1|EH841767
EST:     CAGAGAACCCACCACAGGTGCTGCCCAATGGCTACGTCTACAGCACCAAG                         GCTCTCAAGGAAATGGCGGAAAAGAATGGAGGTAAAA
genomic: CAGAGAACCCACCACAGGTGCTGCCCAATGGCTACGTCTACAGCACCAAGgtttgattct ... gaacttgcagGCTCTCAAGGAAATGGCGGAAAAGAATGGAGGTAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttaaagttgggttactttttttatttatttgatgggtaaatgaacttgcagGCTCTCAAGGAAATGGCGGAAAAGAATGGAGGTAAAATAACATGTCCAAGGACAGGGCTTGTCTGCAACTACACGGAGTTAGTTAAGGCATATATATCAT
                              atttgat  putative branch site (score: 5)
               ttactttttttattta  TA-rich tract