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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttggagcgtcatggctcttaccttacaagtcggatagaactgaaaaataatctaatccattggttttggttgtggttcagGAATGTGAAGGATGGAACAAGTGAAGAAGAAGAAGGGAAAGATTGATAAGGCTTTCGTTAAAATCCAGCTTGTGAATTAGTATCTCTACATATATATGTG

Basic information

species Arabidopsis thaliana
transcript AT3G55005.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125240044|gb|EL254129.1|EL254129
EST:     ACAGGAAAACTCGGAACCTAACATCGTCTTGGAG                         GAATGTGAAGGATGGAACAAGTGAAGAAGAAGAAGGGAAAGATTGATAAGG
genomic: ACAGGAAAACTCGGAACCTAACATCGTCTTGGAGgtaacttgga ... tgtggttcagGAATGTGAAGGATGGAACAAGTGAAGAAGAAGAAGGGAAAGATTGATAAGG
EST: gi|124717057|gb|EH808459.1|EH808459
EST:     AGCTAGACAGGAAAACTCGGAACCTAACATCGTCTTGGAG                         GAATGTGAAGGATGGAACA
genomic: AGCTAGACAGGAAAACTCGGAACCTAACATCGTCTTGGAGgtaacttgga ... tgtggttcagGAATGTGAAGGATGGAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagtcggatagaactgaaaaataatctaatccattggttttggttgtggttcagGAATGTGAAGGATGGAACAAGTGAAGAAGAAGAAGGGAAAGATTGATAAGGCTTTCGTTAAAATCCAGCTTGTGAATTAGTATCTCTACATATATATGTG
                        atctaat  putative branch site (score: 3)
               tgaaaaataatctaat  TA-rich tract