Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactcttcatttttttgaatctgtatgtcctcaggtttaaacaatttttcatgcatgacttcattattcccatgtgcatgctagGCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTG

Basic information

species Arabidopsis thaliana
transcript AT3G54230.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54230.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G173777_T01 (Zea mays), 3'ss of exon 5
gtaaactcttcatttttttgaatctgtatgtcctcaggtttaaacaatttttcatgcatgacttcattattcccatgtgcatgct---agGCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTG
||| |   | |  ||  |   |  |||   | | | |||| ||    | |||  ||  | | || | |  |    | ||    ||   ||||| | ||||| ||| | |    ||| ||||| ||  |||| |  |||||||| || ||||||||||||||||||||||| |||||||| |||
gtacaagttcctcttcatc--acttgt---tgcaccggttgaaggtgtattttctggttcaatttaatcattttgtctgttctcttgtagGCTCAGTGGGGACCTCTACGCAGTGTGCGTGTGATCAGGGAACGGAATTCTGGCATGTCTCGTGGATTTGCTTTTATTGACTTCCCCACTGTG

upper sequence: AT3G54230.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G151614_T03 (Zea mays), 3'ss of exon 6
--gtaaactcttcat--ttttttgaatctgtatgtcctcaggtttaaacaatttttcatgcatgacttcattattcccatgtgcatgctagGCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTG
    ||  |||||||   || ||| | | || |    |    | |  |   | |     |  | | | ||||   ||  |   | || ||| || | ||||| ||| | |    ||| ||||| ||   ||| |  |||||||| || ||||||||||||||||||||||| ||| |||| |||
gtacaagttcttcataacttcttgcaccggttttaagtgtattgtctattgtctcgttcgttttaat-catttcgcctgttctcttg-tagTCTCAGTGGGGCCCTCTACGCAGTGTACGTGTGATCAAGGAACGGAATTCTGGCATGTCTCGTGGATTTGCTTTTATTGACTTCTCCACTGTG

upper sequence: AT3G54230.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 4
-------gtaaactcttcatttttttgaatctg--tatgtcctc----aggtttaaacaat-----ttttcatgcatgacttcattattcccatgtgcatgctagGCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTG
       |||     ||  |||| |||| | |    || | |||    || |||    |||     ||||| |    ||  |||| |||   |||   ||  |||||||||||||||||  | | |||||||||||||||   ||||  |||||||||  | |||||||||||||| || |||||||| ||  |  ||
gtatgtggtacttaatttgttttgttgagtgtcatcattttctcttgtagattttggtaatgtttattttccttacggatatcatcatttatatg---attttagGCTGAATGGGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTATG

upper sequence: AT3G54230.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA16G18030.1 (Glycine max), 3'ss of exon 4
gtaaactcttcatttttttgaatct----gtatgtcctc--aggtttaaacaatttttcatgcatgacttcattattcccatgtgcatg---ctagGCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTG
|||     ||  |||  |||| | |     | |   ||   || |||  | ||| |||  |   |    |   |||   ||| |  |||    ||||||||||| |||||  | | |||||||||||||||   ||||  |||||||||  | |||||||||||||| || |||||||| ||  | |||
gtacgtggtttgtttcgttgagtgtcatcatttactcttgtagattttgataatgttttttttttcttatgggtatcatcatttatatgattttagGCTGAATGTGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGTGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaggtttaaacaatttttcatgcatgacttcattattcccatgtgcatgctagGCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTG
      tttaaacaatttttca  TA-rich tract