Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatatttctttcctcttactatttcttcgctagttttaattttattacatttggtataagcttttcaattccttgcagTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATT

Basic information

species Arabidopsis thaliana
transcript AT3G53570.4
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53570.4 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os01g62080.1 (Oryza sativa), 3'ss of exon 6
gtaagaatatttctttcctc-ttactatttcttcgctagttttaattttattacatttggtataagcttttcaattccttgcagTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATT
||||| | | | ||||| || || |||  ||||  ||  || |    ||  |  |||||  || |    ||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| 
gtaagcaaactactttcgtcattgctaagtcttgactctttattgagttgatggatttg-catgaatggttctatgcct-gcagCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATA

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G386991_T01 (Zea mays), 3'ss of exon 4
gtaagaatatttctttcctcttactatttcttcgctagttt-taattttattacatttggtataagcttttcaattccttgcagTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATT
|||||||  || | |  ||  |   | || ||      ||| |    ||  |  |||||  ||      ||| || ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| 
gtaagaaatttacctctcttgtttcacttattgatccttttgttgagttgatggatttg-catcgatggttctatgcct-gcagTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATTTGTATA

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA03G33100.1 (Glycine max), 3'ss of exon 4
gtaagaatatttctttcctcttactatttcttcgctagttttaattttattacatttggtataagcttttcaattccttgcagTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATT
|||||  |  || ||   | |   | ||| || | |     |  |   |     | |||||||||   ||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
gtaagggttctttttggttgtctttctttattggttgtagatgctaaaagagattgtggtataagtggtttcattctttgcagTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATT

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA19G35800.1 (Glycine max), 3'ss of exon 2
gtaagaatatttc----tttcctcttactatttctt-----cgcta---------gttttaattttattacatttg---------------gtataagcttttcaattccttgcagTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATT
|||||  |  ||     ||  || | | ||||  ||      ||||         ||| ||  ||  ||  |  ||               |||||||   ||  |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
gtaagggttctttctgattctctttcattattggttgtagatgctaaaagagaatgttgtatattggttgtagatgctaaaagagaatgttgtataagtggtttcattctttgcagTTGTGTGCAGATACGGAATTGGTTTGACTATCTTAATCATATTTGTATT

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv08s0040g02640.t01 (Vitis vinifera), 3'ss of exon 4
gtaagaa-tatttctttcctcttactatttcttcgctagttttaatttta--ttacatttggtataagcttttcaattccttgcagTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATT
||| | | | | | | || |  |  | | |  | | | ||   | ||| |  |    |||||||||||   ||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
gtacggactctctgtctctttgtgttctgttcttggttgtagaagtttgaagtgttttttggtataagtcgtttcattctttgcagTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcgctagttttaattttattacatttggtataagcttttcaattccttgcagTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATT
          ttttaat  putative branch site (score: 3)
                                     cttttcaattcctt  putative PPT
       tagttttaattttatt  TA-rich tract