1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacaatttaccattgcaatggattctcccctcgtctcattttctctactgttctaaacaccttttacttgttttgcagAGGCTATGAATCAGGTGGATGAAGAATCCGAAGCCCTGCAAGAAAAGTTCCTAGAGAAGGAGATTGATACAGCAGCATTTGTGCAGAAATACAAGAAGCT
species | Arabidopsis thaliana |
transcript | AT3G53120.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAGATCCTCAAATTCTACTCCCCTGGTTCTCTTCTTCATAAACTTCAAG AGGCTATGAATCAGGEST: gi|19741770|gb|AU227123.1|AU227123
genomic: AGAGATCCTCAAATTCTACTCCCCTGGTTCTCTTCTTCATAAACTTCAAGgtaacaattt ... tgttttgcagAGGCTATGAATCAGG
EST: AGAGATCCTCAAATTCTACTCCCCTGGTTCTCTTCTTCATAAACTTCAAG AGGCTATGAATCAGGTGGATGAAGAATCCGAAGCCCTGCAAGAAAAGTTCC
genomic: AGAGATCCTCAAATTCTACTCCCCTGGTTCTCTTCTTCATAAACTTCAAGgtaacaattt ... tgttttgcagAGGCTATGAATCAGGTGGATGAAGAATCCGAAGCCCTGCAAGAAAAGTTCC
tctcccctcgtctcattttctctactgttctaaacaccttttacttgttttgcagAGGCTATGAATCAGGTGGATGAAGAATCCGAAGCCCTGCAAGAAAAGTTCCTAGAGAAGGAGATTGATACAGCAGCATTTGTGCAGAAATACAAGAAGCT
ttctaaa putative branch site (score: 2)
ccttttacttgtttt putative PPT
ttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaatttaccattgcaatggattctcccctcgtctcattttctctactgttctaaacaccttttacttgttttgcagAGGCTATGAATCAGGTGGATGAAGAATCCGAAGCCCTGCAAGAAAAGTTCCTAGAGAAGGAGATTGATACAGCAGCATTTGTGCAGAAATACAAGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC