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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctatagacgtgttttgctttccttttcattaaaccagctatgatgttagtattctccactgctttataaatgttgtactcttcactggacttatcagttcgtatcgcaaaagcatctctataatgatctctctctactgttaagatatgttgttttcaacatttatttcagGTATACTTCTCTGTGCAAAGACCAAGCTGGCAAAAACGAAACTTGCAGCGTATTTTGCTGAGGGAACATCTCTTGTCGGCTCCGG

Basic information

species Arabidopsis thaliana
transcript AT3G52260.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116399467|gb|EG442059.1|EG442059
EST:     GAATCACCACATCCTGTCCCTGTACATCGACTGGGTAGAGG-ACTTTCAG                         GTATACTTCTCTGTGCAAAGACCAAGCTGGCAAAAACGAAACTTGCAGCG
genomic: GAATCACCACATCCTGTCCCTGTACATCGACTGGGTAGAGGAAC-TTCAGgttagtctat ... tttatttcagGTATACTTCTCTGTGCAAAGACCAAGCTGGCAAAAACGAAACTTGCAGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctataatgatctctctctactgttaagatatgttgttttcaacatttatttcagGTATACTTCTCTGTGCAAAGACCAAGCTGGCAAAAACGAAACTTGCAGCGTATTTTGCTGAGGGAACATCTCTTGTCGGCTCCGG
                                             tttatttc  CT-rich tract
                                    ttttcaacatttattt  TA-rich tract