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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtattctcatctctagcttctgtttgaattattcgttttggtagcaaaagtgtttatgctttgttctgttttcaatattttcagGAGATTCACACTTTGAGAGCTCAGTTAGAAGCAGCCAAGTATGAGGTGATCAAGTACTGTATTGGTACTCTTGTCTCCATCTCAGCCGTTGGTCTCGCTG

Basic information

species Arabidopsis thaliana
transcript AT3G51090.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51090.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv04s0023g02930.t01 (Vitis vinifera), 3'ss of exon 7
gttagtattctcatctctagct-----tctgt----ttgaattattcgttttggtagcaaaagtgtttatgctttgttctgttttcaatattttcagGAGATTCACACTTTGAGAGCTCAGTTAGAAGCAGCCAAGTATGAGGTGATCAAGTACTGTATTGGTACTCTTGTCTCCATCTCAGCCGTTGGTCTCGCTG
|| ||||| | ||  | ||| |     ||| |    || |||  ||  ||||| |  | ||||| |||  |  ||||| | ||||   || |  ||||| |||||  |  | || |||||||||||||| || |||||||| ||||| || ||||| || ||||| ||||| || || ||||| || |||||  |||
gtgagtat-cacaagtgtagttggatatctatgaggttcaatctttgtttttgttttctaaagttttttcgggttgttttctttttcttaatcccagGAAATTCATGCACTAAGGGCTCAGTTAGAAGCTGCAAAGTATGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476184|gb|EG518776.1|EG518776
EST:     TACAAAATCAAAACGGAGAAACCTCTAACCTTACAAACAAACTTGACCGT                         GAGATTCACACTTTGAGAGCTCAGTTAGAAGCAGCCAAGTATGAGGTGATC
genomic: TACAAAATCAAAACGGAGAAACCTCTAACCTTACAAACAAACTTGACCGTgttagtattc ... atattttcagGAGATTCACACTTTGAGAGCTCAGTTAGAAGCAGCCAAGTATGAGGTGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcgttttggtagcaaaagtgtttatgctttgttctgttttcaatattttcagGAGATTCACACTTTGAGAGCTCAGTTAGAAGCAGCCAAGTATGAGGTGATCAAGTACTGTATTGGTACTCTTGTCTCCATCTCAGCCGTTGGTCTCGCTG
                                              tattttc  CT-rich tract
                                     tgttttcaatatttt  TA-rich tract