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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttccctaatccttctctctcaatcagtctactgttttctgcatttgtggtgtggaaataaacagttgcactttcggcattgtgcagATTAGAAGCTGCCTCAAATTCGATTTCACTTGTCCCCAAGTCTGTTTCCGGGTGGCGTGGCCGTTAGCTTCGAAAAAACTTGCCTGAATAAGTCAGAGAA

Basic information

species Arabidopsis thaliana
transcript AT3G50860.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085361|gb|DR381120.1|DR381120
EST:     CTGGAAACTAGTTCTGCTGAAGTCATGAAGGCTGTTGAAGAAATATCAAA                         ATTAGAAGCTGCCTCAAATTCGATTTCACTTGTCCCCAAGTCTGTTTCCGG
genomic: CTGGAAACTAGTTCTGCTGAAGTCATGAAGGCTGTTGAAGAAATATCAAAgtagttccct ... cattgtgcagATTAGAAGCTGCCTCAAATTCGATTTCACTTGTCCCCAAGTCTGTTTCCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttctgcatttgtggtgtggaaataaacagttgcactttcggcattgtgcagATTAGAAGCTGCCTCAAATTCGATTTCACTTGTCCCCAAGTCTGTTTCCGGGTGGCGTGGCCGTTAGCTTCGAAAAAACTTGCCTGAATAAGTCAGAGAA
                       aaataaaca  TA-rich tract