1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttaagatcgttttttagtttcctcaacacttatttttctttccttctgatctgtctcattaacagtactccttgactggttaattcacagAGGATGGTTCGAGCAACTCAAGCTTTGCGTTCCTGAGTAGTTTCCAGAGCAATTTGTTAGCAGATGGTCTGAAGAACCAGGTAGGTTGGGGACATGTCTG
species | Arabidopsis thaliana |
transcript | AT3G26950.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACTACTTATGCTCAGTTGGTTGCTGCATTAGCCGCGGCAAACAGTCTCA AGGATGGTTCGAGCAACTCAAGCTTTGCGTTCCTGAGTAGTTTCCAGAGCAEST: gi|86083800|gb|DR379559.1|DR379559
genomic: GACTACTTATGCTCAGTTGGTTGCTGCATTAGCCGCGGCAAACAGTCTCAgttaagatcg ... taattcacagAGGATGGTTCGAGCAACTCAAGCTTTGCGTTCCTGAGTAGTTTCCAGAGCA
EST: GACTACTTATGCTCAGTTGGTTGCTGCATTAGCCGCGGCAAACAGTCTCA AGGATGGTTCGAGCAACTCAAGCTTTGCGTTCCTGAGTAGTTTCCAGAGCA
genomic: GACTACTTATGCTCAGTTGGTTGCTGCATTAGCCGCGGCAAACAGTCTCAgttaagatcg ... taattcacagAGGATGGTTCGAGCAACTCAAGCTTTGCGTTCCTGAGTAGTTTCCAGAGCA
ttctttccttctgatctgtctcattaacagtactccttgactggttaattcacagAGGATGGTTCGAGCAACTCAAGCTTTGCGTTCCTGAGTAGTTTCCAGAGCAATTTGTTAGCAGATGGTCTGAAGAACCAGGTAGGTTGGGGACATGTCTG
ttaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaagatcgttttttagtttcctcaacacttatttttctttccttctgatctgtctcattaacagtactccttgactggttaattcacagAGGATGGTTCGAGCAACTCAAGCTTTGCGTTCCTGAGTAGTTTCCAGAGCAATTTGTTAGCAGATGGTCTGAAGAACCAGGTAGGTTGGGGACATGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC