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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactattcttgaacagattgttctgtcgttttttcacaaagcgtggcctaataaaaatcttctgtgctcagTTTTCACACCCGAACAGTTGGCAGAGAAATATAGCAATGTAACATTCTTGGTCTACTGTGGTATTTTGATTTTAATAGTAGCCGTGCACCATTTCCTCTA

Basic information

species Arabidopsis thaliana
transcript AT3G26670.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125101269|gb|EL156439.1|EL156439
EST:     GTTCTTGGAAACGTTTTCCTTGTAGCTTTTGGTAATCACCAGTTCACCAG                         TTTTCACACCCGAACAGTTGG
genomic: GTTCTTGGAAACGTTTTCCTTGTAGCTTTTGGTAATCACCAGT-CACCAGgtaactattc ... ctgtgctcagTTTTCACACCCGAACAGTTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttctgtcgttttttcacaaagcgtggcctaataaaaatcttctgtgctcagTTTTCACACCCGAACAGTTGGCAGAGAAATATAGCAATGTAACATTCTTGGTCTACTGTGGTATTTTGATTTTAATAGTAGCCGTGCACCATTTCCTCTA
                             gcctaat  putative branch site (score: 3)
                                         tcttctgt  putative PPT
                                taataaaaatcttct  TA-rich tract