Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgtttttatactttgtttaactctgtttcatcgatacaaaattctaatactttgctttcatgctcttcttttgtgtttagCTATTTTACCAATACGCTTACTCTTCCGGTAGTCAATGGTCCTACAGAAGGTCTTGCACTTATATACTGTGGCCATTTCTTCACAGCCATTGTTG

Basic information

species Arabidopsis thaliana
transcript AT3G25585.4
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116414049|gb|EG456641.1|EG456641
EST:     TGGTTTTGGGTTATTTCTGCTGTTCCATTTTTTGGAGCAACATGGGAACA                         CTATTTTACCAATACGCTTACTCTTCCGGTAGTCAATGGTCCTACAGAAGG
genomic: TGGTTTTGGGTTATTTCTGCTGTTCCATTTTTTGGAGCAACATGGGAACAgtaagcgttt ... ttgtgtttagCTATTTTACCAATACGCTTACTCTTCCGGTAGTCAATGGTCCTACAGAAGG
EST: gi|301502798|gb|HO208338.1|HO208338
EST:     TGGTTTTGGGTTATTTCTGCTGTTCCATTTTTTGGAGCAACATGGGAACA                         CTATTTTACCAATACGCTTACTCTTCCGGTAGTCAATGGTCCTACAGAAGG
genomic: TGGTTTTGGGTTATTTCTGCTGTTCCATTTTTTGGAGCAACATGGGAACAgtaagcgttt ... ttgtgtttagCTATTTTACCAATACGCTTACTCTTCCGGTAGTCAATGGTCCTACAGAAGG
EST: gi|116466773|gb|EG509365.1|EG509365
EST:     TGGTTTTGGGTTATTTCTGCTGTTCCATTTTTTGGAGCAACATGGGAACA                         CTATTTTTACCAATACGCTTACTCTTTCCGGTAGTCAATGGTCCTACAGAA
genomic: TGGTTTTGGGTTATTTCTGCTGTTCCATTTTTTGGAGCAACATGGGAACAgtaagcgttt ... ttgtgtttagCTATTTT-ACCAATACGCTTACTCTT-CCGGTAGTCAATGGTCCTACAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatcgatacaaaattctaatactttgctttcatgctcttcttttgtgtttagCTATTTTACCAATACGCTTACTCTTCCGGTAGTCAATGGTCCTACAGAAGGTCTTGCACTTATATACTGTGGCCATTTCTTCACAGCCATTGTTG
                ttctaat  putative branch site (score: 2)
                        ctttgctttcatgctc  CT-rich tract
        atacaaaattctaata  TA-rich tract