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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcaataaaaactcttattacaatattttgagacaaaaacactctattaataatgttcatgtctttttgcagATTCTGAAAGCGATGATGAACACGAGGATTAATCGCATGTTGGGAATATTAGTAGTGCACACGCTCTATATCTCATGAATCTGAACCACACGGAGACTAG

Basic information

species Arabidopsis thaliana
transcript AT3G25540.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116454728|gb|EG497320.1|EG497320
EST:     TGTGAAACAAGTGCAAGATCGAGGCAAGCTTAGCGAAGATGTTAGATCCG                         ATTCTGAAAGCGATGATGAACACGAGGATTAATCGCATGTTGGGAATATTA
genomic: TGTGAAACAAGTGCAAGATCGAGGCAAGCTTAGCGAAGATGTTAGATCCGgtacgcaata ... ctttttgcagATTCTGAAAGCGATGATGAACACGAGGATTAATCGCATGTTGGGAATATTA
EST: gi|124840900|gb|EH925339.1|EH925339
EST:     TGTGAAACAAGTGCAAGATCGAGGCAAGCTTAGCGAAGATGTTAGATCCG                         ATTCTAGAAAGCGATGATGAACACG
genomic: TGTGAAACAAGTGCAAGATCGAGGCAAGCTTAGCGAAGATGTTAGATCCGgtacgcaata ... ctttttgcagATTCT-GAAAGCGATGATGAACACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacaatattttgagacaaaaacactctattaataatgttcatgtctttttgcagATTCTGAAAGCGATGATGAACACGAGGATTAATCGCATGTTGGGAATATTAGTAGTGCACACGCTCTATATCTCATGAATCTGAACCACACGGAGACTAG
                           tattaat  putative branch site (score: 2)
                                          tgtcttttt  putative PPT
                           tattaataatgttcat  TA-rich tract